PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G030800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 238aa    MW: 26494.7 Da    PI: 5.4453
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G030800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.82.1e-397105198
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+
  Aqcoe5G030800.1.p   7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLTHLPITDRNEAAVTISYEAQARVQDPIYGCVSHIFALQQQVVNLQ 98 
                        7*************************89**************************************************************** PP

             DUF260  92 aelallk 98 
                        a+la+l 
  Aqcoe5G030800.1.p  99 AQLASLS 105
                        ***9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.9986108IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-377104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLTHLPITD  60
RNEAAVTISY EAQARVQDPI YGCVSHIFAL QQQVVNLQAQ LASLSSAQAS LGDLVNGSIA  120
LRPQEDKMDA TFPSYPHDDH YGFFHFNDCK MPQQIQAYAN NNNNENMLYC DTGFINPNPM  180
ADYYNDSVMT EESVHFPSFE DPSHSMASLD MQMNNRKWAF QDTEDFQSMA SAYIQSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262268.11e-113PREDICTED: LOB domain-containing protein 29
SwissprotQ9M2J71e-63LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA5AIW95e-95A5AIW9_VITVI; Putative uncharacterized protein
STRINGVIT_07s0005g03020.t012e-94(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.13e-53LBD family protein